SNP Profiles of C SUL 7 View Data

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_Input profile	CC	GG	CG	TT	CT	CC	GG	CT	CC	AA	AG	CT	AA	CC
1._C_SUL_7	CC	GG	CG	TT	CT	CC	GG	CT	CC	AA	AG	CT	AA	CC
2._GC-08-261-8-29	CC	GG	CG	TT	CT	CC	GG	CT	CC	AA	AG	CT	AA	CC
3._GC-08-261-8-29	CC	GG	CG	TT	CT	CC	GG	CT	CC	AA	AG	CT	AA	CC
4._GC-08-261-8-29	CC	GG	CG	TT	CT	CC	GG	CT	CC	AA	AG	CT	AA	CC
5._GC-08-261-8-29	CC	GG	CG	TT	CT	CC	GG	CT	CC	AA	AG	CT	AA	CC
6._C_SUL_7	CC	GG	CG	TT	CT	CC	GG	CT	CC	AA	AG	CT	AA	CC
7._C_SUL_7	CC	GG	CG	TT	CT	CC	GG	CT	CC	AA	AG	CT	AA	CC
8._GC-08-261-8-29	CC	GG	CG	TT	CT	CC	GG	CT	CC	AA	AG	CT	AA	CC
9._C_SUL_7	CC	GG	CG	TT	CT	CC	GG	CT	CC	AA	AG	CT	AA	CC
10._C_SUL_7	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	CC
11._NA	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	CC
12._NA	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	CC
13._NA	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	CC
14._NA	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	CC
15._C_SUL_7	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	CC
16._C_SUL_7	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	CC
17._C_SUL_7	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	CC
18._C_SUL_7	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	CC
19._NA	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	_
20._C_SUL_7	CC	AA	CC	CT	CC	TT	GG	CT	CC	AA	GG	CC	AA	_
21._C_SUL_7	CT	AG	CG	CT	CT	CT	GT	CT	CT	AT	AG	CC	AG	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC	GG
1._C_SUL_7	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC	GG
2._GC-08-261-8-29	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC	GG
3._GC-08-261-8-29	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC	GG
4._GC-08-261-8-29	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC	GG
5._GC-08-261-8-29	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC	GG
6._C_SUL_7	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC	GG
7._C_SUL_7	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC	GG
8._GC-08-261-8-29	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC	GG
9._C_SUL_7	AT	CG	CT	CT	CG	GG	AG	CT	AC	CC	GG	CT	AC	GG
10._C_SUL_7	AT	GG	CT	TT	CG	GT	AG	CC	CC	CC	GG	CC	AC	GG
11._NA	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC	GG
12._NA	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC	GG
13._NA	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC	GG
14._NA	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC	GG
15._C_SUL_7	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC	GG
16._C_SUL_7	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC	GG
17._C_SUL_7	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC	GG
18._C_SUL_7	AT	GG	CT	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC	GG
19._NA	AT	GG	_	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC	GG
20._C_SUL_7	AT	GG	_	TT	CG	GT	AA	CC	CC	CC	GG	CC	AC	GG
21._C_SUL_7	AT	GG	CT	CT	GG	GG	AG	TT	CC	CG	GT	CT	AC	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X	X_X
1._C_SUL_7	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X	X_X
2._GC-08-261-8-29	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X	X_X
3._GC-08-261-8-29	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X	X_X
4._GC-08-261-8-29	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X	X_X
5._GC-08-261-8-29	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X	X_X
6._C_SUL_7	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X	X_X
7._C_SUL_7	GG	AA	CT	AA	CG	AC	TT	GG	AC	AT	CG	X_X	X_X	X_X
8._GC-08-261-8-29	GG	AA	CT	AA	CG	_	TT	GG	AC	AT	CG	X_X	X_X	X_X
9._C_SUL_7	GG	AA	CT	AA	CG	_	TT	GG	AC	AT	CG	X_X	X_X	X_X
10._C_SUL_7	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
11._NA	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
12._NA	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
13._NA	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
14._NA	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
15._C_SUL_7	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
16._C_SUL_7	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
17._C_SUL_7	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
18._C_SUL_7	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
19._NA	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
20._C_SUL_7	GG	AA	CT	AA	CG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
21._C_SUL_7	GG	AT	CC	AA	CG	CC	CT	GT	CC	AT	CG	X_X	X_X	X_X

Input profile: C_SUL_7

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Mars Center for Cocoa Science, Brazil

Location: 8829 7

Dapeng Zhang, 2016

1._C_SUL_7

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 4

Dapeng Zhang, 2016

2._C_SUL_7 GC-08-261-8-29

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

3._C_SUL_7 GC-08-261-8-29

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._C_SUL_7 GC-08-261-8-29

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

5._C_SUL_7 GC-08-261-8-29

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._C_SUL_7

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 3

Dapeng Zhang, 2016

7._C_SUL_7

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 5

Dapeng Zhang, 2016

8._C_SUL_7 GC-08-261-8-29

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._C_SUL_7

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._C_SUL_7

76.9 %
39 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P95 583

Dapeng Zhang, 2016

11._C_SUL_7 NA

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

12._C_SUL_7 NA

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

13._C_SUL_7 NA

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

14._C_SUL_7 NA

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

15._C_SUL_7

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._C_SUL_7

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 5

Dapeng Zhang, 2016

17._C_SUL_7

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 6

Dapeng Zhang, 2016

18._C_SUL_7

75.6 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 7

Dapeng Zhang, 2016

19._C_SUL_7 NA

74.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

20._C_SUL_7

74.3 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 3

Dapeng Zhang, 2016

21._C_SUL_7

69.2 %
39 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25